EpiTrace :: An algorithm to decode single cell replicational age from chromatin accessibility data.
EpiTrace is designed for deriving a reference time axis for development, disease, and ageing.
It works across a wide range of species, ranging from yeast to human.
Documentation: https://epitrace.readthedocs.io/
Code: https://github.com/MagpiePKU/EpiTrace
scLineageFidelity :: An algorithm to infer developmental lineage fidelity of single cells from transcriptome profiles.
scLineageFidelity is designed for analyzing complex biological events, including development, regeneration, somatic evolution (oncogenesis and tumor evolution) and cell-in-cell events including EV uptake, phagocytosis and fusion.
Documentation and code: https://github.com/MagpiePKU/scLineageFidelity